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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
Assay category
139
DNA binding
138
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
78
histone
78
histone modification
39
narrow histone mark
39
transcription factor
38
broad histone mark
22
control
11
RNA binding protein
3
chromatin remodeller
Date released
46
August, 2017
37
May, 2021
31
December, 2017
24
February, 2018
1
August, 2021
Available data
146
bam
120
fastq
115
bigWig
110
bed narrowPeak
tagAlign
bed bed3+
14
bigBed narrowPeak
Organism
139
Homo sapiens
Biosample type
641
tissue
464
cell line
179
primary cell
139
in vitro differentiated cells
Organ
46
connective tissue
19
embryo
19
epithelium
15
liver
Project
139
AMP
Genome assembly (visualization)
83
GRCh38
83
hg19
Lab
102
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
bed bed3+
tagAlign
BIOSAMPLE
ASSAY
139 results
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ChIP-seq
in vitro differentiated cells
adipocyte
46
embryonic stem cell
40
hepatocyte
15
pancreatic endoderm
15
definitive endodermal cell
5
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