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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
19
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
705
February, 2021
328
November, 2017
307
May, 2021
293
August, 2017
293
August, 2021
291
May, 2020
257
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
October, 2017
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
123
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
tagAlign
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
292
Homo sapiens
Biosample type
229
tissue
44
cell line
20
in vitro differentiated cells
Organ
130
kidney
92
heart
31
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
2
artery
2
epithelium
1
adipose tissue
Project
293
AMP
Genome assembly (visualization)
89
GRCh38
43
hg19
Lab
128
Katalin Susztak, Upenn
127
AMP-T2D consortium
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bed bed3+
tagAlign
BIOSAMPLE
ASSAY
293 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
1
adipocyte
1
osteoblast
1
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