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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ATAC-seq
77
snATAC-seq
5
DNase-seq
4
FAIRE-seq
Assay category
1791
Transcription
1371
DNA binding
538
DNA accessibility
93
DNA methylation
28
3D chromatin structure
1
DNA sequencing
Date released
101
February, 2023
100
May, 2020
98
May, 2022
49
February, 2021
34
May, 2021
26
November, 2019
23
October, 2019
16
January, 2021
14
September, 2018
12
August, 2021
11
August, 2017
10
April, 2020
8
October, 2017
7
August, 2020
7
July, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
1
August, 2022
1
November, 2018
1
November, 2020
Available data
348
bed narrowPeak
309
bam
270
bigWig
161
bigBed narrowPeak
bed bed3+
130
bed broadPeak
128
bigBed broadPeak
102
fastq
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
537
Homo sapiens
Biosample type
259
primary cell
211
tissue
39
in vitro differentiated cells
29
cell line
Organ
166
pancreas
107
epithelium
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
24
liver
22
connective tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
6
adipose tissue
5
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
402
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
265
hg19
161
GRCh38
Lab
349
AMP-T2D consortium
97
Klaus Kaestner, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
40
inconsistent ontology term
28
audit script error
1
inconsistent replicate
files.file_type!
bed bed3+
tagAlign
organ_slims!
kidney
BIOSAMPLE
ASSAY
538 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 38 more…
tissue
islet of Langerhans
68
7
1
1
coronary artery
36
liver
20
retina
15
pigmented layer of retina
12
+ See 31 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 5 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
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