Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
86
Homo sapiens
Biosample type
86
tissue
Organ
898
pancreas
695
liver
635
connective tissue
499
epithelium
477
adipose tissue
357
heart
276
kidney
217
vasculature
213
blood vessel
159
bone element
133
brain
131
artery
86
limb
69
blood
69
bodily fluid
57
eye
47
musculature of body
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
60
GRCh38
60
hg19
Lab
86
AMP-T2D consortium
files.file_type!
bed bed3+
tagAlign
organ_slims!
thymus
BIOSAMPLE
ASSAY
86 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
+ See 6 more…
See all biosamples
Download