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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
879
ChIP-seq
179
single cell RNA-seq
117
ATAC-seq
87
RNA microarray
27
WGBS
25
pCHi-C
25
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1213
Transcription
879
DNA binding
148
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
318
narrow histone mark
297
broad histone mark
184
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
258
August, 2017
238
October, 2019
193
May, 2020
165
August, 2021
120
July, 2018
115
May, 2019
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
5
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1907
bam
1772
bigWig
1072
tsv
921
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
bed bed3+
176
bigBed broadPeak
153
txt
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2404
Homo sapiens
Biosample type
2413
tissue
963
primary cell
653
cell line
357
in vitro differentiated cells
7
stem cell
Organ
540
connective tissue
481
adipose tissue
460
pancreas
355
liver
250
heart
237
brain
167
kidney
150
bone element
93
blood vessel
93
vasculature
86
limb
49
musculature of body
41
nerve
34
artery
24
spleen
22
eye
20
lung
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2334
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1556
GRCh38
1533
hg19
Lab
2143
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
xls
month_released!
February, 2023
BIOSAMPLE
ASSAY
2413 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
287
50
6
57
4
5
3
1
1
4
1
adipose tissue
382
2
2
3
1
liver
167
142
1
20
3
1
1
1
1
kidney
49
27
64
11
6
1
1
1
bone element
84
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