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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
9
total RNA-seq
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
DNA binding
11
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
7
control
3
histone
3
histone modification
3
nucleotide modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
34
August, 2021
6
November, 2020
5
February, 2023
2
March, 2023
Available data
14
bed narrowPeak
14
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
45
Homo sapiens
Biosample type
562
primary cell
312
tissue
52
in vitro differentiated cells
47
cell line
2
stem cell
Organ
31
liver
6
epithelium
6
pancreas
2
kidney
Project
40
AMP
5
T1D
2
community
Genome assembly (visualization)
15
hg19
Lab
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
7
inconsistent ontology term
files.file_type!
bed bed3+
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
47 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
EndoC_BH1
6
3
2
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
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