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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
136
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
148
DNA binding
Target of assay
88
histone
88
histone modification
45
broad histone mark
42
narrow histone mark
32
transcription factor
28
control
9
RNA binding protein
2
chromatin remodeller
Date released
60
August, 2017
43
May, 2021
December, 2017
24
February, 2018
21
August, 2021
Available data
103
bam
81
bigWig
77
fastq
76
bed narrowPeak
40
tagAlign
bed bed3+
Organism
148
Homo sapiens
Biosample type
831
tissue
484
cell line
276
primary cell
148
in vitro differentiated cells
Organ
60
connective tissue
9
embryo
3
epithelium
3
pancreas
Project
148
AMP
Genome assembly (visualization)
75
GRCh38
74
hg19
Lab
111
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bed bed3+
month_released!
December, 2017
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
in vitro differentiated cells
adipocyte
60
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
9
cardiomyocytes
3
definitive endodermal cell
3
endocrine cell
3
pancreatic PP cell
3
posterior foregut
3
primitive gut cell
3
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