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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
Assay category
74
DNA binding
Target of assay
49
histone
49
histone modification
25
narrow histone mark
25
transcription factor
24
broad histone mark
6
chromatin remodeller
2
RNA binding protein
1
recombinant protein
Date released
32
September, 2018
25
August, 2017
10
November, 2017
4
October, 2017
3
November, 2018
December, 2017
Available data
88
fastq
87
bam
86
bigWig
48
bed narrowPeak
15
bigBed narrowPeak
bed bed3+
4
tagAlign
2
bed broadPeak
Organism
74
Homo sapiens
Biosample type
44
primary cell
13
cell line
12
tissue
5
in vitro differentiated cells
Organ
44
pancreas
21
epithelium
13
connective tissue
13
liver
8
adipose tissue
4
brain
Project
74
AMP
Genome assembly (visualization)
72
hg19
65
GRCh38
Lab
74
AMP-T2D consortium
Audit category:
74
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
files.file_type!
bed bed3+
month_released!
December, 2017
August, 2020
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
pancreatic acinar cell
8
cell line
HepG2
13
tissue
white adipose tissue
8
brain
4
in vitro differentiated cells
adipocyte
5
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