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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
ChIP-seq
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
434
Transcription
261
DNA accessibility
245
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
215
histone
215
histone modification
113
broad histone mark
102
narrow histone mark
27
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
32
October, 2019
June, 2019
27
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
566
bigWig
554
bam
409
fastq
270
tsv
248
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1020
Homo sapiens
Biosample type
2565
tissue
1020
primary cell
631
cell line
369
in vitro differentiated cells
7
stem cell
Organ
379
epithelium
346
pancreas
29
vasculature
25
blood vessel
23
kidney
20
vein
19
connective tissue
13
brain
8
blood
8
bodily fluid
8
liver
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
491
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
575
hg19
483
GRCh38
Lab
458
AMP-T2D consortium
324
Klaus Kaestner, Upenn
237
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
29
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
month_released!
December, 2018
June, 2019
BIOSAMPLE
ASSAY
1020 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
exocrine cell
39
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