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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
447
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
447
DNA binding
193
Transcription
24
DNA accessibility
7
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
107
control
100
histone modification
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
50
November, 2018
46
December, 2017
40
May, 2022
29
August, 2021
19
August, 2017
9
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
October, 2019
December, 2018
1
February, 2020
Available data
602
bam
540
bigWig
420
fastq
361
bed narrowPeak
323
bigBed narrowPeak
174
tsv
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
678
Homo sapiens
Biosample type
381
cell line
286
tissue
8
primary cell
3
in vitro differentiated cells
Organ
778
pancreas
678
liver
579
connective tissue
453
adipose tissue
413
epithelium
266
heart
246
kidney
159
bone element
152
vasculature
149
blood vessel
117
artery
64
brain
54
eye
41
blood
41
bodily fluid
37
limb
29
musculature of body
24
embryo
20
lung
17
nerve
16
skeleton
11
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
678
AMP
Genome assembly (visualization)
533
hg19
454
GRCh38
Lab
610
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
month_released!
December, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
678 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
360
14
1
1
1
2
1
1
tissue
liver
78
167
20
3
1
1
1
1
1
right lobe of liver
5
3
1
1
2
1
primary cell
hepatocyte
1
5
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
3
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