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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
52
total RNA-seq
33
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
136
DNA binding
54
Transcription
34
DNA accessibility
4
3D chromatin structure
Target of assay
83
histone
83
histone modification
42
broad histone mark
40
narrow histone mark
27
transcription factor
26
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
61
August, 2017
40
August, 2021
39
February, 2018
31
December, 2017
26
February, 2021
12
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
206
bam
170
bigWig
141
fastq
127
bed narrowPeak
52
tsv
34
tagAlign
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
237
Homo sapiens
Biosample type
2492
tissue
847
primary cell
638
cell line
237
in vitro differentiated cells
7
stem cell
Organ
83
connective tissue
24
embryo
19
epithelium
15
liver
1
adipose tissue
Project
237
AMP
Genome assembly (visualization)
183
hg19
162
GRCh38
4
hg18
Lab
232
AMP-T2D consortium
5
Struan F.A. Grant, CHOP
Audit category:
45
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
bed bed3+
month_released!
May, 2021
BIOSAMPLE
ASSAY
237 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
60
5
7
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
15
4
1
hepatocyte
15
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