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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
19
total RNA-seq
1
ATAC-seq
1
GRO-seq
Assay category
54
DNA binding
19
Transcription
1
DNA accessibility
Target of assay
34
histone
34
histone modification
19
broad histone mark
17
control
15
narrow histone mark
3
transcription factor
Date released
40
October, 2019
13
February, 2018
10
December, 2017
8
August, 2021
2
May, 2021
1
February, 2020
1
January, 2018
Available data
78
bam
60
bigWig
41
bed narrowPeak
27
fastq
26
bigBed narrowPeak
19
tsv
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
75
Homo sapiens
Biosample type
41
tissue
26
in vitro differentiated cells
8
cell line
Organ
912
pancreas
778
liver
656
connective tissue
503
epithelium
484
adipose tissue
363
heart
276
kidney
235
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
23
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
55
GRCh38
55
hg19
1
hg18
Lab
75
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
month_released!
October, 2017
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
tissue
tibial nerve
35
5
1
in vitro differentiated cells
pancreatic endoderm
15
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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