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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
Assay category
25
DNA binding
Target of assay
14
histone
14
histone modification
11
transcription factor
10
narrow histone mark
7
chromatin remodeller
4
broad histone mark
1
RNA binding protein
Date released
November, 2017
12
August, 2017
5
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
35
bam
35
bed narrowPeak
35
bigWig
35
fastq
12
bigBed narrowPeak
bed bed3+
Organism
25
Homo sapiens
Biosample type
9
in vitro differentiated cells
6
tissue
5
cell line
5
primary cell
Organ
9
pancreas
6
liver
5
epithelium
2
connective tissue
2
embryo
Project
25
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
Lab
25
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
25
inconsistent control read length
5
inconsistent control run_type
3
inconsistent assembly
files.file_type!
bed bed3+
month_released!
September, 2017
November, 2017
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
in vitro differentiated cells
definitive endodermal cell
3
adipocyte
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
cell line
HepG2
5
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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