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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
9
total RNA-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
19
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
5
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
315
November, 2017
194
May, 2020
63
December, 2017
51
August, 2017
50
November, 2018
40
May, 2022
32
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
17
bed narrowPeak
17
bigWig
9
tsv
4
bam
4
tagAlign
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
32
Homo sapiens
Biosample type
31
cell line
1
primary cell
Organ
130
kidney
92
heart
32
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
32
AMP
Genome assembly (visualization)
15
hg19
Lab
31
Bing Ren, UCSD
1
AMP-T2D consortium
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
primary cell
hepatocyte
1
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