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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
26
total RNA-seq
14
ATAC-seq
1
Hi-C
1
single cell RNA-seq
Assay category
64
DNA binding
27
Transcription
14
DNA accessibility
1
3D chromatin structure
Target of assay
32
histone
32
histone modification
28
transcription factor
17
broad histone mark
15
narrow histone mark
4
control
RNA binding protein
2
chromatin remodeller
Date released
713
February, 2021
392
May, 2021
372
August, 2017
369
November, 2017
341
May, 2020
313
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
115
May, 2019
104
July, 2019
76
April, 2019
75
December, 2017
73
September, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
58
November, 2018
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
27
June, 2019
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
106
fastq
104
bam
100
bigWig
74
bed narrowPeak
42
bigBed narrowPeak
26
tsv
1
csv
Organism
106
Homo sapiens
Biosample type
73
primary cell
26
cell line
7
tissue
Organ
72
pancreas
61
epithelium
25
blood
25
bodily fluid
7
spleen
1
liver
Project
106
AMP
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
106
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
32
missing controlled_by
files.file_type!
bed bed3+
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 1 more…
cell line
GM12878
25
HepG2
1
tissue
spleen
7
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