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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
total RNA-seq
50
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
4
Hi-C
3
single cell RNA-seq
1
pCHi-C
Assay category
255
Transcription
DNA accessibility
50
DNA binding
27
DNA methylation
4
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
Date released
664
February, 2021
406
November, 2017
367
August, 2017
363
May, 2021
280
October, 2019
241
May, 2020
232
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
96
July, 2019
80
April, 2019
79
December, 2017
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
4
September, 2017
3
June, 2018
1
March, 2019
Available data
312
bam
292
bigWig
254
tsv
50
tagAlign
27
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
bed bed3+
4
hdf5
Organism
337
Homo sapiens
Biosample type
262
tissue
74
primary cell
1
cell line
Organ
203
liver
21
heart
17
connective tissue
13
brain
12
adipose tissue
11
epithelium
10
kidney
10
musculature of body
8
vasculature
7
blood vessel
6
pancreas
5
limb
2
artery
2
pericardium
1
eye
Project
292
AMP
45
T1D
Genome assembly (visualization)
295
hg19
280
GRCh38
Lab
292
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
files.file_type!
bed bed3+
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
337 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
pCHi-C
tissue
liver
145
50
1
heart left ventricle
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 24 more…
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
+ See 43 more…
cell line
HepG2
1
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