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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
total RNA-seq
51
single cell RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
6
ATAC-seq
4
Hi-C
2
FAIRE-seq
Assay category
233
Transcription
27
DNA methylation
8
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
249
bigWig
246
bam
229
tsv
50
fastq
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
272
Homo sapiens
Biosample type
197
tissue
75
primary cell
Organ
163
pancreas
44
epithelium
25
heart
19
connective tissue
15
brain
12
adipose tissue
11
kidney
10
musculature of body
10
vasculature
9
blood vessel
9
liver
5
limb
3
artery
2
pericardium
1
eye
Project
272
AMP
Genome assembly (visualization)
251
hg19
243
GRCh38
Lab
272
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
bed bed3+
month_released!
January, 2019
BIOSAMPLE
ASSAY
272 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
FAIRE-seq
tissue
islet of Langerhans
120
1
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 31 more…
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