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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
15
small RNA-seq
14
RRBS
12
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
49
Transcription
26
DNA methylation
8
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
406
November, 2017
395
May, 2021
341
May, 2020
311
August, 2021
302
October, 2019
264
August, 2017
259
February, 2021
199
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
87
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
19
June, 2019
16
January, 2021
14
May, 2023
10
December, 2019
10
November, 2020
9
September, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
68
bigWig
66
bam
49
tsv
22
bed bedMethyl
22
bigBed bedMethyl
7
bed narrowPeak
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
87
Homo sapiens
Biosample type
67
tissue
20
primary cell
Organ
25
heart
connective tissue
15
brain
12
adipose tissue
11
epithelium
11
kidney
10
musculature of body
10
vasculature
9
blood vessel
9
liver
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
87
AMP
Genome assembly (visualization)
70
hg19
63
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bed3+
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
87 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
right lobe of liver
2
2
1
body of pancreas
2
2
gastrocnemius medialis
4
heart
2
1
1
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primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
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