Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
969
total RNA-seq
805
ChIP-seq
248
ATAC-seq
180
single cell RNA-seq
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
DNase-seq
Assay category
1165
Transcription
805
DNA binding
281
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
586
histone modification
585
histone
307
narrow histone mark
278
broad histone mark
155
control
66
transcription factor
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
258
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
87
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
October, 2018
65
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
5
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1767
bam
1669
bigWig
1018
tsv
931
bed narrowPeak
516
bigBed narrowPeak
319
fastq
238
tagAlign
213
bed broadPeak
bed bed3+
176
bigBed broadPeak
69
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2331
Homo sapiens
Biosample type
2340
tissue
1048
primary cell
659
cell line
369
in vitro differentiated cells
7
stem cell
Organ
518
connective tissue
459
adipose tissue
427
pancreas
355
liver
286
heart
238
brain
231
kidney
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2243
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1544
GRCh38
1451
hg19
Lab
1988
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
8
audit script error
6
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
organ_slims!
bone element
month_released!
October, 2018
BIOSAMPLE
ASSAY
2340 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
50
68
6
7
4
3
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
142
20
1
3
1
1
1
1
kidney
49
27
75
64
6
1
1
1
heart left ventricle
3
35
2
18
4
1
1
1
+ See 144 more…
See all biosamples
Download