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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
947
total RNA-seq
684
ChIP-seq
232
ATAC-seq
180
single cell RNA-seq
27
WGBS
27
snATAC-seq
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
DNase-seq
Assay category
1143
Transcription
684
DNA binding
265
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
448
histone modification
447
histone
258
broad histone mark
189
narrow histone mark
157
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
258
August, 2017
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
87
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
5
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1655
bam
1554
bigWig
1010
tsv
825
bed narrowPeak
514
bigBed narrowPeak
377
fastq
209
bed broadPeak
bed bed3+
189
tagAlign
172
bigBed broadPeak
69
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
Organism
2167
Homo sapiens
Biosample type
2176
tissue
1018
primary cell
631
cell line
361
in vitro differentiated cells
7
stem cell
Organ
539
connective tissue
481
adipose tissue
475
pancreas
349
liver
278
heart
227
kidney
bone element
152
brain
104
blood vessel
104
vasculature
49
musculature of body
45
artery
32
eye
24
spleen
21
limb
20
lung
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2079
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1432
GRCh38
1337
hg19
Lab
1824
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
8
audit script error
4
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
organ_slims!
bone element
month_released!
October, 2019
BIOSAMPLE
ASSAY
2176 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
DNase-seq
tissue
adipose tissue
382
2
2
3
1
islet of Langerhans
278
29
55
6
7
3
1
1
4
1
liver
166
137
20
1
3
1
1
1
1
kidney
49
23
75
64
6
1
1
1
heart left ventricle
3
35
2
18
4
1
1
1
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