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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
36
total RNA-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
223
DNA binding
43
Transcription
33
DNA accessibility
3
DNA methylation
Target of assay
190
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
32
control
4
RNA binding protein
4
transcription factor
Date released
107
October, 2019
91
November, 2017
32
February, 2023
28
May, 2019
16
July, 2019
16
October, 2017
13
February, 2020
3
June, 2019
2
March, 2020
Available data
250
bam
236
bed narrowPeak
228
bigWig
133
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
bed bed3+
31
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
308
Homo sapiens
Biosample type
291
tissue
17
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
308
AMP
Genome assembly (visualization)
187
GRCh38
169
hg19
Lab
308
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bed3+
organ_slims!
bone element
BIOSAMPLE
ASSAY
308 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
FAIRE-seq
tissue
brain
20
1
1
1
layer of hippocampus
23
islet of Langerhans
2
14
2
4
retina
3
15
substantia nigra
16
1
+ See 74 more…
primary cell
choroid plexus epithelial cell
3
1
retinal pigment epithelial cell
3
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
cerebellar granule cell
2
+ See 1 more…
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