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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1600
ChIP-seq
1514
total RNA-seq
523
ATAC-seq
360
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
50
pCHi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
9
3D chromatin structure
Date released
4
July, 2019
1
August, 2021
1
December, 2018
1
March, 2019
1
March, 2023
1
October, 2019
Available data
23
hic
bedpe bed3+
3
cool
bed bed3+
2
bigWig
2
hdf5
1
bedpe
1
fastq
Organism
9
Homo sapiens
Biosample type
6
tissue
2
primary cell
1
cell line
Organ
4
limb
4
musculature of body
1
blood vessel
1
epithelium
1
kidney
1
liver
1
pancreas
1
vasculature
1
vein
Project
8
AMP
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
files.file_type!
bed bed3+
bedpe bed3+
organ_slims!
brain
BIOSAMPLE
ASSAY
9 results
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Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
1
kidney
1
primary cell
chondrocytes
1
endothelial cell of umbilical vein
1
cell line
HepG2
1
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