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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
2
ATAC-seq
2
DNase-seq
Assay category
99
DNA binding
4
DNA accessibility
Target of assay
53
histone
53
histone modification
46
transcription factor
32
broad histone mark
21
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
41
August, 2017
2
October, 2019
1
March, 2019
1
October, 2017
Available data
3149
bam
2907
bigWig
1574
bed narrowPeak
1574
tsv
1337
fastq
915
bigBed narrowPeak
280
tagAlign
275
bed broadPeak
247
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
97
Homo sapiens
Biosample type
58
cell line
28
tissue
16
primary cell
1
in vitro differentiated cells
Organ
58
liver
brain
14
pancreas
13
musculature of body
6
epithelium
6
vasculature
4
blood vessel
2
connective tissue
2
vein
1
adipose tissue
Project
103
AMP
Genome assembly (visualization)
102
hg19
64
GRCh38
Lab
101
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
13
inconsistent control read length
2
inconsistent assembly
files.file_type!
bed bed3+
organ_slims!
brain
BIOSAMPLE
ASSAY
103 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
subcutaneous abdominal adipose tissue
1
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
in vitro differentiated cells
adipocyte
1
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