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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1652
ChIP-seq
1400
total RNA-seq
424
ATAC-seq
293
single cell RNA-seq
86
RNA microarray
83
snATAC-seq
55
pCHi-C
28
WGBS
23
Hi-C
18
small RNA-seq
15
RRBS
5
DNase-seq
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
5
DNA accessibility
Date released
5
August, 2017
Available data
192
bam
192
bed narrowPeak
192
bigBed narrowPeak
192
bigWig
190
bed broadPeak
190
bigBed broadPeak
bed bed3+
12
fastq
Organism
5
Homo sapiens
Biosample type
2
primary cell
2
tissue
1
in vitro differentiated cells
Organ
epithelium
3
kidney
1
connective tissue
1
liver
1
pancreas
Project
5
AMP
Genome assembly (visualization)
4
hg19
2
GRCh38
Lab
5
AMP-T2D consortium
files.file_type!
bed bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
5 results
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DNase-seq
primary cell
skeletal muscle myoblast
2
tissue
islet of Langerhans
1
right lobe of liver
1
in vitro differentiated cells
adipocyte
1
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