Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
450
ChIP-seq
70
total RNA-seq
9
ATAC-seq
1
WGBS
Assay category
450
DNA binding
70
Transcription
9
DNA accessibility
1
DNA methylation
Target of assay
348
transcription factor
89
recombinant protein
74
control
63
RNA binding protein
30
chromatin remodeller
23
histone
23
histone modification
12
broad histone mark
11
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
69
February, 2021
61
November, 2018
27
December, 2018
26
October, 2019
23
January, 2019
8
August, 2021
2
March, 2020
Available data
531
bam
472
bigWig
427
fastq
389
bed narrowPeak
354
bigBed narrowPeak
84
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
530
Homo sapiens
Biosample type
1703
tissue
530
cell line
355
primary cell
248
in vitro differentiated cells
Organ
366
liver
66
artery
66
blood vessel
66
heart
66
vasculature
62
pancreas
60
blood
60
bodily fluid
epithelium
15
kidney
8
embryo
Project
530
AMP
Genome assembly (visualization)
459
hg19
413
GRCh38
Lab
530
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
530 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
cell line
HepG2
359
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
Panc1
13
H1-hESC
8
+ See 5 more…
See all biosamples
Download