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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
18
small RNA-seq
12
WGBS
10
ATAC-seq
9
RRBS
5
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
60
Transcription
21
DNA methylation
12
DNA accessibility
5
3D chromatin structure
Target of assay
3
control
Date released
681
February, 2021
400
November, 2017
371
May, 2021
349
August, 2017
341
May, 2020
311
August, 2021
273
October, 2019
149
February, 2023
135
July, 2018
119
May, 2022
115
May, 2019
93
July, 2019
80
April, 2019
79
November, 2018
74
October, 2018
60
December, 2017
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
25
June, 2019
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
9
November, 2020
8
January, 2018
5
March, 2019
5
March, 2023
4
December, 2019
4
September, 2017
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
78
bam
78
bigWig
60
tsv
17
bed bedMethyl
17
bigBed bedMethyl
7
bed narrowPeak
bed bed3+
2
bigBed narrowPeak
2
hdf5
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
98
Homo sapiens
Biosample type
82
tissue
16
primary cell
Organ
25
heart
17
connective tissue
15
brain
12
adipose tissue
epithelium
11
kidney
11
pancreas
10
musculature of body
10
vasculature
9
blood vessel
9
liver
5
limb
3
artery
2
pericardium
1
eye
Project
98
AMP
Genome assembly (visualization)
79
hg19
76
GRCh38
Lab
93
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bed bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
98 results
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Clear Filters
total RNA-seq
small RNA-seq
WGBS
ATAC-seq
RRBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
2
1
islet of Langerhans
4
1
1
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
cardiac atrium fibroblast
1
+ See 8 more…
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