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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
104
ATAC-seq
50
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
190
Transcription
104
DNA accessibility
50
DNA binding
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
681
February, 2021
400
November, 2017
371
May, 2021
349
August, 2017
341
May, 2020
311
August, 2021
273
October, 2019
149
February, 2023
135
July, 2018
119
May, 2022
115
May, 2019
93
July, 2019
80
April, 2019
79
November, 2018
74
October, 2018
60
December, 2017
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
25
June, 2019
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
9
November, 2020
8
January, 2018
5
March, 2019
5
March, 2023
4
December, 2019
4
September, 2017
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
284
bam
260
bigWig
189
tsv
50
tagAlign
27
bed narrowPeak
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
346
Homo sapiens
Biosample type
198
tissue
147
primary cell
1
cell line
Organ
194
liver
5
pancreas
Project
301
AMP
45
T1D
Genome assembly (visualization)
263
hg19
209
GRCh38
Lab
296
AMP-T2D consortium
45
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
8
inconsistent ontology term
files.file_type!
bed bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
346 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
tissue
liver
143
50
islet of Langerhans
4
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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