Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
530
DNA binding
188
Transcription
23
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
334
transcription factor
105
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
51
August, 2017
50
November, 2018
48
December, 2017
40
May, 2022
31
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
1
May, 2021
Available data
655
bam
598
bigWig
450
fastq
422
bed narrowPeak
343
bigBed narrowPeak
169
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
756
Homo sapiens
Biosample type
400
cell line
355
tissue
1
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
755
AMP
1
T1D
Genome assembly (visualization)
591
hg19
500
GRCh38
Lab
684
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
756 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
1
2
1
tissue
liver
142
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
primary cell
megakaryocyte
1
Download