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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
60
ChIP-seq
35
ATAC-seq
8
WGBS
3
pCHi-C
3
total RNA-seq
Assay category
96
Transcription
60
DNA binding
35
DNA accessibility
8
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
20
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
3
February, 2020
3
March, 2020
2
February, 2021
2
June, 2019
Available data
98
tsv
78
bed narrowPeak
49
bigWig
29
bam
6
bed bedMethyl
6
bigBed bedMethyl
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
202
Homo sapiens
Biosample type
198
tissue
2
cell line
2
primary cell
Organ
286
pancreas
218
kidney
epithelium
202
heart
166
liver
112
brain
94
connective tissue
89
bone element
70
blood vessel
70
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
202
AMP
Genome assembly (visualization)
235
GRCh38
hg19
Lab
162
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
files.file_type!
bed bed3+
organ_slims!
epithelium
assembly!
hg19
BIOSAMPLE
ASSAY
202 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
total RNA-seq
tissue
left cardiac atrium
18
40
coronary artery
2
35
1
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
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cell line
smooth muscle cell of the coronary artery
2
primary cell
cardiac fibroblast
2
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