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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
2
ATAC-seq
Assay category
75
DNA binding
2
DNA accessibility
Target of assay
47
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
August, 2017
4
October, 2017
2
October, 2019
1
March, 2019
Available data
3110
bam
2897
bigWig
1675
bed narrowPeak
1510
tsv
1071
fastq
1000
bigBed narrowPeak
313
tagAlign
281
bed broadPeak
270
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
77
Homo sapiens
Biosample type
58
cell line
11
tissue
8
primary cell
Organ
58
liver
15
brain
6
epithelium
6
vasculature
4
blood vessel
2
pancreas
2
vein
Project
77
AMP
Genome assembly (visualization)
76
hg19
59
GRCh38
Lab
75
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
files.file_type!
bed bed3+
organ_slims!
spinal cord
month_released!
August, 2017
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
ATAC-seq
cell line
HepG2
58
tissue
brain
3
cingulate gyrus
2
islet of Langerhans
2
middle frontal area 46
2
caudate nucleus
1
+ See 1 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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