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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
2
DNase-seq
Assay category
55
DNA binding
2
DNA accessibility
Target of assay
49
transcription factor
9
RNA binding protein
6
histone
6
histone modification
5
chromatin remodeller
4
narrow histone mark
2
broad histone mark
1
other context
1
other post-translational modification
Date released
53
November, 2017
4
August, 2017
Available data
3372
bam
3154
bigWig
1804
bed narrowPeak
1600
tsv
1358
fastq
1029
bigBed narrowPeak
tagAlign
318
bed broadPeak
281
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
57
Homo sapiens
Biosample type
47
cell line
9
primary cell
1
in vitro differentiated cells
Organ
47
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
vein
1
connective tissue
Project
57
AMP
Genome assembly (visualization)
57
hg19
43
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
tagAlign
organ_slims!
vein
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
DNase-seq
cell line
HepG2
47
primary cell
skeletal muscle myoblast
2
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
in vitro differentiated cells
adipocyte
1
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