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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
2
DNase-seq
Assay category
77
DNA binding
2
DNA accessibility
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
15
August, 2017
Available data
3372
bam
3154
bigWig
1804
bed narrowPeak
1600
tsv
1358
fastq
1029
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
79
Homo sapiens
Biosample type
58
cell line
20
primary cell
1
in vitro differentiated cells
Organ
58
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
vein
1
connective tissue
Project
79
AMP
Genome assembly (visualization)
79
hg19
63
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
organ_slims!
vein
lab.title!
KPMP
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
in vitro differentiated cells
adipocyte
1
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