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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
23
ChIP-seq
5
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
23
DNA binding
5
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bam
408
bigWig
401
tsv
26
fastq
10
bed narrowPeak
8
bigBed narrowPeak
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
431
Homo sapiens
Biosample type
429
tissue
2
primary cell
1
in vitro differentiated cells
Organ
748
pancreas
727
liver
543
connective tissue
474
epithelium
432
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
41
nerve
36
musculature of body
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
432
AMP
Genome assembly (visualization)
409
hg19
406
GRCh38
Lab
432
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bed3+
month_released!
August, 2017
BIOSAMPLE
ASSAY
432 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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