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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
62
total RNA-seq
52
ATAC-seq
4
Hi-C
2
single cell RNA-seq
1
WGBS
Assay category
77
DNA binding
64
Transcription
52
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
34
broad histone mark
21
control
17
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
72
February, 2021
65
October, 2019
35
February, 2023
12
May, 2019
8
July, 2019
4
February, 2020
2
August, 2021
Available data
190
bam
155
bigWig
145
bed narrowPeak
89
bigBed narrowPeak
64
tsv
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
198
Homo sapiens
Biosample type
130
tissue
66
cell line
2
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
198
AMP
Genome assembly (visualization)
165
GRCh38
130
hg19
Lab
198
AMP-T2D consortium
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
198 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
WGBS
tissue
coronary artery
5
1
36
tibial nerve
35
5
1
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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