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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
33
ChIP-seq
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
33
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
RNA binding protein
Date released
66
February, 2021
35
February, 2023
24
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
101
bam
84
bigWig
73
bed narrowPeak
58
tsv
24
bigBed narrowPeak
6
tagAlign
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
136
Homo sapiens
Biosample type
68
tissue
66
cell line
2
primary cell
Organ
910
pancreas
720
liver
647
connective tissue
495
epithelium
480
adipose tissue
317
heart
273
kidney
248
brain
218
vasculature
215
blood vessel
159
bone element
136
artery
86
limb
62
musculature of body
59
blood
59
bodily fluid
56
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
123
GRCh38
88
hg19
Lab
136
AMP-T2D consortium
files.file_type!
bed bed3+
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
136 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
tissue
coronary artery
1
36
4
tibial artery
1
1
23
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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