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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
190
DNA binding
24
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
162
histone
162
histone modification
107
narrow histone mark
55
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
May, 2019
16
October, 2017
15
July, 2019
12
February, 2020
2
March, 2020
1
February, 2023
Available data
215
bam
197
bigWig
178
bed narrowPeak
118
tagAlign
102
bigBed narrowPeak
47
bed broadPeak
38
bigBed broadPeak
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
223
Homo sapiens
Biosample type
210
tissue
13
primary cell
Organ
915
pancreas
778
liver
657
connective tissue
498
epithelium
485
adipose tissue
302
heart
271
kidney
223
brain
173
vasculature
169
blood vessel
159
bone element
132
artery
79
limb
69
blood
69
bodily fluid
57
eye
55
musculature of body
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
223
AMP
Genome assembly (visualization)
160
GRCh38
114
hg19
Lab
223
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bed3+
month_released!
May, 2019
BIOSAMPLE
ASSAY
223 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
caudate nucleus
15
1
cingulate gyrus
14
+ See 72 more…
primary cell
choroid plexus epithelial cell
3
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
cerebellar granule cell
2
Purkinje cell
1
See all biosamples
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