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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
138
ChIP-seq
WGBS
3
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
138
DNA binding
3
3D chromatin structure
2
DNA methylation
1
DNA accessibility
1
DNA sequencing
Target of assay
107
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
32
August, 2017
20
May, 2022
18
August, 2021
13
December, 2017
8
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
1
December, 2018
1
February, 2020
1
February, 2021
1
November, 2018
1
October, 2019
Available data
680
bam
621
bigWig
463
fastq
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
342
Homo sapiens
Biosample type
243
tissue
91
cell line
7
primary cell
1
in vitro differentiated cells
Organ
669
pancreas
590
connective tissue
468
adipose tissue
342
liver
324
epithelium
194
heart
171
kidney
151
bone element
99
vasculature
97
blood vessel
80
brain
67
artery
34
musculature of body
29
limb
28
eye
22
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
9
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
342
AMP
Genome assembly (visualization)
185
hg19
162
GRCh38
Lab
305
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
bed narrowPeak
assay_title!
WGBS
BIOSAMPLE
ASSAY
342 results
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total RNA-seq
ChIP-seq
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
62
1
1
1
1
1
right lobe of liver
3
3
2
1
cell line
HepG2
14
71
2
2
1
1
primary cell
hepatocyte
5
1
1
in vitro differentiated cells
hepatocyte
1
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