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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
30
total RNA-seq
5
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
122
DNA binding
31
Transcription
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
94
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
8
transcription factor
3
RNA binding protein
3
recombinant protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
13
December, 2017
3
November, 2018
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
Available data
95
bam
74
fastq
44
tagAlign
12
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
165
Homo sapiens
Biosample type
93
tissue
70
cell line
1
in vitro differentiated cells
1
primary cell
Organ
286
pancreas
218
kidney
207
epithelium
202
heart
165
liver
111
brain
94
connective tissue
89
bone element
70
blood vessel
70
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
7
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
165
AMP
Genome assembly (visualization)
hg19
515
GRCh38
Lab
129
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
missing controlled_by
files.file_type!
bed bed3+
assembly!
hg19
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
165 results
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ChIP-seq
total RNA-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
55
9
1
2
1
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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