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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
49
total RNA-seq
6
pCHi-C
5
WGBS
2
STARR-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
126
DNA binding
50
Transcription
5
DNA methylation
2
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
95
control
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
9
transcription factor
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
21
October, 2019
20
May, 2022
17
August, 2021
13
December, 2017
4
February, 2023
4
November, 2018
2
February, 2020
1
December, 2018
1
February, 2021
1
July, 2019
1
June, 2019
1
March, 2020
Available data
97
bam
75
fastq
44
tagAlign
17
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
193
Homo sapiens
Biosample type
119
tissue
71
cell line
2
primary cell
1
in vitro differentiated cells
Organ
286
pancreas
218
kidney
207
epithelium
202
heart
166
liver
112
brain
94
connective tissue
89
bone element
70
blood vessel
70
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
193
AMP
Genome assembly (visualization)
hg19
522
GRCh38
Lab
157
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
files.file_type!
bed bed3+
assembly!
hg19
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
total RNA-seq
pCHi-C
WGBS
STARR-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
1
3
1
islet of Langerhans
2
14
4
1
right lobe of liver
3
1
1
1
retina
3
pigmented layer of retina
2
cell line
HepG2
56
9
1
1
2
1
1
primary cell
hepatocyte
1
retinal pigment epithelial cell
1
in vitro differentiated cells
hepatocyte
1
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