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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
501
ChIP-seq
189
total RNA-seq
22
ATAC-seq
3
Hi-C
3
small RNA-seq
2
STARR-seq
2
WGBS
2
pCHi-C
1
RRBS
single cell RNA-seq
1
whole genome sequencing assay
Assay category
501
DNA binding
192
Transcription
22
DNA accessibility
3
3D chromatin structure
3
DNA methylation
1
DNA sequencing
Target of assay
334
transcription factor
97
control
82
recombinant protein
67
histone
67
histone modification
58
RNA binding protein
45
narrow histone mark
23
chromatin remodeller
22
broad histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
August, 2017
50
November, 2018
40
May, 2022
32
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
1
December, 2018
1
February, 2020
1
February, 2021
Available data
655
bam
604
bigWig
437
fastq
423
bed narrowPeak
352
bigBed narrowPeak
174
tsv
66
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
1
vcf
Organism
726
Homo sapiens
Biosample type
400
cell line
303
tissue
15
in vitro differentiated cells
8
primary cell
Organ
726
liver
674
pancreas
539
connective tissue
432
adipose tissue
404
epithelium
270
heart
248
brain
217
vasculature
213
blood vessel
212
kidney
159
bone element
135
artery
86
limb
69
blood
69
bodily fluid
57
eye
41
nerve
35
musculature of body
34
embryo
24
spleen
20
vein
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
726
AMP
Genome assembly (visualization)
595
hg19
504
GRCh38
Lab
655
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
month_released!
August, 2017
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
726 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
STARR-seq
WGBS
pCHi-C
RRBS
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
1
1
1
tissue
liver
97
167
20
1
1
1
right lobe of liver
10
3
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
5
1
Liver fetal (hepatocyte)
1
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