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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
189
total RNA-seq
22
ATAC-seq
3
Hi-C
3
small RNA-seq
2
STARR-seq
2
WGBS
2
pCHi-C
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
438
DNA binding
193
Transcription
22
DNA accessibility
3
3D chromatin structure
3
DNA methylation
1
DNA sequencing
Target of assay
334
transcription factor
82
recombinant protein
72
control
58
RNA binding protein
29
histone
29
histone modification
23
chromatin remodeller
16
broad histone mark
13
narrow histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
144
May, 2020
63
December, 2017
50
November, 2018
40
May, 2022
August, 2017
31
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
655
bam
604
bigWig
437
fastq
423
bed narrowPeak
352
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
664
Homo sapiens
Biosample type
388
cell line
254
tissue
15
in vitro differentiated cells
7
primary cell
Organ
745
pancreas
664
liver
543
connective tissue
470
epithelium
432
adipose tissue
357
heart
276
kidney
217
vasculature
213
blood vessel
159
bone element
133
brain
131
artery
86
limb
69
blood
69
bodily fluid
57
eye
41
nerve
36
musculature of body
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
664
AMP
Genome assembly (visualization)
556
hg19
476
GRCh38
Lab
593
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
tagAlign
month_released!
August, 2017
BIOSAMPLE
ASSAY
664 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
STARR-seq
WGBS
pCHi-C
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
366
14
1
2
2
1
1
1
tissue
liver
47
167
20
1
1
1
1
right lobe of liver
10
3
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
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