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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
10
total RNA-seq
2
STARR-seq
1
ATAC-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
24
DNA binding
10
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
8
histone
8
histone modification
5
control
4
broad histone mark
4
narrow histone mark
1
RNA binding protein
Date released
315
November, 2017
194
May, 2020
63
December, 2017
51
August, 2017
50
November, 2018
40
May, 2022
32
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
23
bed narrowPeak
23
bigWig
11
bam
10
tsv
4
tagAlign
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
39
Homo sapiens
Biosample type
31
cell line
6
tissue
2
primary cell
Organ
160
kidney
100
heart
86
brain
65
limb
49
blood vessel
49
vasculature
40
nerve
39
liver
36
epithelium
26
artery
21
eye
20
pancreas
19
vein
8
embryo
7
connective tissue
4
gonad
4
ovary
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
39
AMP
Genome assembly (visualization)
22
hg19
7
GRCh38
Lab
31
Bing Ren, UCSD
8
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
39 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
ATAC-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
tissue
liver
5
1
primary cell
Liver fetal (hepatocyte)
1
hepatocyte
1
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