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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
23
ATAC-seq
5
WGBS
3
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
193
Transcription
24
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
9
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
October, 2019
1
December, 2018
1
February, 2020
1
November, 2018
Available data
190
bigWig
174
tsv
171
bam
28
bed narrowPeak
13
fastq
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
232
Homo sapiens
Biosample type
203
tissue
22
cell line
7
primary cell
Organ
720
pancreas
515
connective tissue
416
adipose tissue
377
epithelium
232
liver
heart
224
kidney
159
bone element
121
vasculature
120
blood vessel
103
artery
52
eye
33
brain
23
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
232
AMP
Genome assembly (visualization)
189
hg19
166
GRCh38
Lab
179
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
files.file_type!
bed bed3+
organ_slims!
heart
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
232 results
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total RNA-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
3
1
1
1
1
1
right lobe of liver
3
1
1
2
1
cell line
HepG2
14
1
1
2
2
1
1
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
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