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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
30
total RNA-seq
5
Hi-C
4
WGBS
2
ATAC-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
124
DNA binding
31
Transcription
6
DNA methylation
5
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
Target of assay
96
control
23
histone
23
histone modification
14
broad histone mark
9
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
35
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
7
October, 2019
3
March, 2020
2
February, 2021
2
July, 2019
1
December, 2018
1
February, 2020
1
November, 2018
Available data
701
bam
bigWig
465
fastq
454
bed narrowPeak
371
bigBed narrowPeak
174
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
bed bed3+
4
hic
4
tar
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
174
Homo sapiens
Biosample type
95
tissue
68
cell line
10
primary cell
1
in vitro differentiated cells
Organ
321
pancreas
223
epithelium
223
kidney
169
heart
167
liver
106
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
27
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
174
AMP
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
137
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bed bed3+
bigWig
BIOSAMPLE
ASSAY
174 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
ATAC-seq
RRBS
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
1
3
1
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
52
9
2
1
2
1
1
primary cell
endothelial cell of umbilical vein
5
2
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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