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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
544
ChIP-seq
180
total RNA-seq
23
ATAC-seq
5
WGBS
4
Hi-C
3
small RNA-seq
2
RRBS
2
pCHi-C
1
DNase-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
544
DNA binding
184
Transcription
25
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
325
transcription factor
112
histone modification
111
histone
104
control
82
recombinant protein
62
narrow histone mark
57
RNA binding protein
49
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
51
August, 2017
50
November, 2018
40
May, 2022
August, 2021
26
October, 2019
9
July, 2019
5
December, 2019
5
January, 2019
4
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
697
bam
620
bigWig
465
fastq
437
bed narrowPeak
371
bigBed narrowPeak
165
tsv
82
tagAlign
67
bed broadPeak
67
bigBed broadPeak
bed bed3+
4
tar
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
csv
1
hdf5
Organism
766
Homo sapiens
Biosample type
369
cell line
355
tissue
27
primary cell
15
in vitro differentiated cells
Organ
913
pancreas
746
liver
654
connective tissue
500
epithelium
484
adipose tissue
271
heart
251
brain
217
vasculature
213
blood vessel
159
bone element
146
kidney
135
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
26
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
766
AMP
Genome assembly (visualization)
612
hg19
530
GRCh38
Lab
726
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
audit script error
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
month_released!
August, 2021
BIOSAMPLE
ASSAY
766 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
pCHi-C
DNase-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
360
5
1
1
1
1
tissue
liver
142
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
primary cell
endothelial cell of umbilical vein
17
2
1
hepatocyte
5
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
15
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