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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
563
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
Hi-C
5
WGBS
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
FAIRE-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
563
DNA binding
193
Transcription
25
DNA accessibility
7
DNA methylation
5
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
115
histone modification
114
histone
109
control
82
recombinant protein
64
narrow histone mark
58
RNA binding protein
50
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
51
August, 2017
50
November, 2018
40
May, 2022
32
August, 2021
26
October, 2019
9
July, 2019
5
December, 2019
5
January, 2019
4
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
701
bam
637
bigWig
465
fastq
454
bed narrowPeak
371
bigBed narrowPeak
174
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
bed bed3+
4
hic
4
tar
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
798
Homo sapiens
Biosample type
400
cell line
355
tissue
28
primary cell
15
in vitro differentiated cells
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
798
AMP
Genome assembly (visualization)
627
hg19
530
GRCh38
Lab
727
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
audit script error
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
nerve
BIOSAMPLE
ASSAY
798 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
small RNA-seq
RRBS
STARR-seq
pCHi-C
DNase-seq
FAIRE-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
1
2
1
1
tissue
liver
142
167
20
1
3
1
1
1
1
right lobe of liver
10
3
1
1
2
1
primary cell
endothelial cell of umbilical vein
17
2
1
hepatocyte
1
5
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
15
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