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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
9
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Date released
10
July, 2019
5
March, 2020
4
August, 2017
2
February, 2020
1
January, 2018
1
May, 2022
Available data
41
bigWig
40
bam
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
23
Homo sapiens
Biosample type
20
tissue
3
primary cell
Organ
720
pancreas
515
connective tissue
416
adipose tissue
377
epithelium
232
liver
229
heart
224
kidney
159
bone element
121
vasculature
120
blood vessel
103
artery
52
eye
33
brain
23
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
12
hg19
7
GRCh38
Lab
23
AMP-T2D consortium
files.file_type!
bed bed3+
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
23 results
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Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
1
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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