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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
31
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
June, 2019
1
January, 2018
1
May, 2022
Available data
60
bigWig
52
bed narrowPeak
48
bam
45
bed broadPeak
39
bigBed narrowPeak
bed bed3+
32
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
54
Homo sapiens
Biosample type
49
tissue
5
primary cell
Organ
836
pancreas
777
liver
641
connective tissue
484
adipose tissue
413
epithelium
318
heart
254
kidney
248
brain
223
vasculature
219
blood vessel
137
artery
86
limb
75
bone element
69
blood
69
bodily fluid
57
eye
54
musculature of body
41
nerve
28
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
54
AMP
Genome assembly (visualization)
32
hg19
13
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
inconsistent ontology term
files.file_type!
bed bed3+
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
2
1
skeletal muscle satellite cell
1
1
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