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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
10
single cell RNA-seq
10
snATAC-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
39
DNA binding
18
Transcription
11
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
19
April, 2020
10
July, 2019
10
June, 2019
7
May, 2019
6
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
bed bed3+
33
bigBed broadPeak
15
tagAlign
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
81
Homo sapiens
Biosample type
69
tissue
13
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
19
LungMap
Genome assembly (visualization)
39
hg19
20
GRCh38
Lab
63
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
8
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
single cell RNA-seq
snATAC-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
small RNA-seq
ATAC-seq
WGBS
tissue
skeletal muscle tissue
22
1
1
4
1
1
lung
9
10
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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