Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
132
ChIP-seq
62
ATAC-seq
11
snATAC-seq
8
single cell RNA-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
DNase-seq
1
pCHi-C
Assay category
299
Transcription
132
DNA binding
76
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
50
broad histone mark
41
narrow histone mark
33
control
10
transcription factor
6
RNA binding protein
2
nucleotide modification
Date released
140
August, 2017
126
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
16
October, 2019
11
September, 2018
9
March, 2020
8
April, 2018
8
January, 2021
6
July, 2019
5
March, 2019
5
November, 2018
5
October, 2017
4
November, 2020
4
September, 2017
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
474
bam
412
bigWig
283
tsv
243
fastq
141
bed narrowPeak
69
bigBed narrowPeak
bed bed3+
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
515
Homo sapiens
Biosample type
478
tissue
31
primary cell
13
cell line
Organ
917
pancreas
778
liver
657
connective tissue
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
492
AMP
30
T1D
Genome assembly (visualization)
425
hg19
396
GRCh38
Lab
459
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
522 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
284
29
58
7
3
4
1
1
1
body of pancreas
3
35
4
2
2
pancreas
2
16
4
1
2
1
1
1
endocrine pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic stellate cell
4
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
cell line
Panc1
13
Download